DC-Build-Header: r-bioc-org.hs.eg.db 3.20.0-3 / 2025-04-14 05:04:34 +0000 DC-Task: type:rebuild-full-testing-i386 source:r-bioc-org.hs.eg.db version:3.20.0-3 chroot:testing-i386 esttime:105 logfile:/tmp/r-bioc-org.hs.eg.db_3.20.0-3_testing-i386.log modes: DC-System-Info: 8 cores (Intel(R) Xeon(R) Platinum 8259CL CPU @ 2.50GHz), 32516492 kB RAM DC-Sbuild-call: su user42 -c 'sbuild -n -A -s --force-orig-source --apt-update -d testing -v --no-run-lintian --arch i386 r-bioc-org.hs.eg.db_3.20.0-3' sbuild (Debian sbuild) 0.88.4~bpo12+2 (24 February 2025) on ip-10-84-234-28 +==============================================================================+ | r-bioc-org.hs.eg.db 3.20.0-3 (i386) Mon, 14 Apr 2025 05:04:34 +0000 | +==============================================================================+ Package: r-bioc-org.hs.eg.db Version: 3.20.0-3 Source Version: 3.20.0-3 Distribution: testing Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 Build Type: full I: Unpacking /home/user42/.cache/sbuild/testing-i386.tar.gz to /tmp/tmp.sbuild.lQ0dMceGMG... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Mon, 14 Apr 2025 05:04:43 +0000 | +------------------------------------------------------------------------------+ Get:1 http://deb.debian.org/debian testing InRelease [175 kB] Get:2 http://deb.debian.org/debian testing/main Sources.diff/Index [27.9 kB] Get:3 http://deb.debian.org/debian testing/main i386 Packages.diff/Index [27.9 kB] Get:4 http://deb.debian.org/debian testing/main Sources 2025-04-13-2007.11.pdiff [1447 B] Get:5 http://deb.debian.org/debian testing/main Sources 2025-04-14-0218.22.pdiff [43.3 kB] Get:6 http://deb.debian.org/debian testing/main i386 Packages 2025-04-13-2007.11.pdiff [1094 B] Get:7 http://deb.debian.org/debian testing/main i386 Packages 2025-04-14-0218.22.pdiff [44.3 kB] Get:5 http://deb.debian.org/debian testing/main Sources 2025-04-14-0218.22.pdiff [43.3 kB] Get:7 http://deb.debian.org/debian testing/main i386 Packages 2025-04-14-0218.22.pdiff [44.3 kB] Fetched 321 kB in 1s (328 kB/s) Reading package lists... Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bash debianutils tzdata 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1889 kB of archives. After this operation, 2048 B disk space will be freed. Get:1 http://deb.debian.org/debian testing/main i386 debianutils i386 5.22 [92.6 kB] Get:2 http://deb.debian.org/debian testing/main i386 bash i386 5.2.37-2 [1537 kB] Get:3 http://deb.debian.org/debian testing/main i386 tzdata all 2025b-2 [260 kB] Preconfiguring packages ... Fetched 1889 kB in 0s (41.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12817 files and directories currently installed.) Preparing to unpack .../debianutils_5.22_i386.deb ... Unpacking debianutils (5.22) over (5.21) ... Setting up debianutils (5.22) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12817 files and directories currently installed.) Preparing to unpack .../bash_5.2.37-2_i386.deb ... Unpacking bash (5.2.37-2) over (5.2.37-1.1+b2) ... Setting up bash (5.2.37-2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12816 files and directories currently installed.) Preparing to unpack .../tzdata_2025b-2_all.deb ... Unpacking tzdata (2025b-2) over (2025b-1) ... Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Apr 14 05:04:48 UTC 2025. Universal Time is now: Mon Apr 14 05:04:48 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for debianutils (5.22) ... +------------------------------------------------------------------------------+ | Fetch source files Mon, 14 Apr 2025 05:04:48 +0000 | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'r-bioc-org.hs.eg.db' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-org.hs.eg.db.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-org.hs.eg.db.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 98.2 MB of source archives. Get:1 http://deb.debian.org/debian testing/main r-bioc-org.hs.eg.db 3.20.0-3 (dsc) [2163 B] Get:2 http://deb.debian.org/debian testing/main r-bioc-org.hs.eg.db 3.20.0-3 (tar) [98.2 MB] Get:3 http://deb.debian.org/debian testing/main r-bioc-org.hs.eg.db 3.20.0-3 (diff) [5480 B] Fetched 98.2 MB in 1s (96.6 MB/s) Download complete and in download only mode +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 14 Apr 2025 05:04:50 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-annotationdbi (>= 1.67.0), build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-annotationdbi (>= 1.67.0), build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-CyPwUb/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-CyPwUb/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-CyPwUb/apt_archive ./ Release [609 B] Ign:3 copy:/build/reproducible-path/resolver-CyPwUb/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-CyPwUb/apt_archive ./ Sources [652 B] Get:5 copy:/build/reproducible-path/resolver-CyPwUb/apt_archive ./ Packages [690 B] Fetched 1951 B in 0s (167 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: r-bioc-annotationdbi : Depends: r-bioc-iranges but it is not installable Depends: r-bioc-keggrest but it is not going to be installed E: Unable to correct problems, you have held broken packages. E: The following information from --solver 3.0 may provide additional context: Unable to satisfy dependencies. Reached two conflicting decisions: 1. r-bioc-annotationdbi:i386 is selected for install because: 1. sbuild-build-depends-main-dummy:i386=0.invalid.0 is selected for install 2. sbuild-build-depends-main-dummy:i386 Depends r-bioc-annotationdbi (>= 1.67.0) 2. r-bioc-annotationdbi:i386 Depends r-bioc-iranges but none of the choices are installable: [no choices] apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use Setup apt archive ----------------- Merged Build-Depends: dose-distcheck Filtered Build-Depends: dose-distcheck dpkg-deb: building package 'sbuild-build-depends-dose3-dummy' in '/build/reproducible-path/resolver-CyPwUb/apt_archive/sbuild-build-depends-dose3-dummy.deb'. Ign:1 copy:/build/reproducible-path/resolver-CyPwUb/apt_archive ./ InRelease Get:2 copy:/build/reproducible-path/resolver-CyPwUb/apt_archive ./ Release [615 B] Ign:3 copy:/build/reproducible-path/resolver-CyPwUb/apt_archive ./ Release.gpg Get:4 copy:/build/reproducible-path/resolver-CyPwUb/apt_archive ./ Sources [1231 B] Get:5 copy:/build/reproducible-path/resolver-CyPwUb/apt_archive ./ Packages [1304 B] Fetched 3150 B in 0s (232 kB/s) Reading package lists... Reading package lists... Install dose3 build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: dose-distcheck The following NEW packages will be installed: dose-distcheck sbuild-build-depends-dose3-dummy 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 369 kB of archives. After this operation, 1819 kB of additional disk space will be used. Get:1 copy:/build/reproducible-path/resolver-CyPwUb/apt_archive ./ sbuild-build-depends-dose3-dummy 0.invalid.0 [836 B] Get:2 http://deb.debian.org/debian testing/main i386 dose-distcheck i386 7.0.0-6 [368 kB] Fetched 369 kB in 0s (16.7 MB/s) Selecting previously unselected package dose-distcheck. (Reading database ... 12816 files and directories currently installed.) Preparing to unpack .../dose-distcheck_7.0.0-6_i386.deb ... Unpacking dose-distcheck (7.0.0-6) ... Selecting previously unselected package sbuild-build-depends-dose3-dummy. Preparing to unpack .../sbuild-build-depends-dose3-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-dose3-dummy (0.invalid.0) ... Setting up dose-distcheck (7.0.0-6) ... Setting up sbuild-build-depends-dose3-dummy (0.invalid.0) ... (I)Doseparse: Parsing and normalizing... (I)Dose_deb: Parsing Packages file -... (I)Dose_common: total packages 67063 (I)Dose_applications: Cudf Universe: 67063 packages (I)Dose_applications: --checkonly specified, consider all packages as background packages (I)Dose_applications: Solving... output-version: 1.2 native-architecture: i386 report: - package: sbuild-build-depends-main-dummy version: 0.invalid.0 architecture: i386 status: broken reasons: - missing: pkg: package: r-bioc-annotationdbi version: 1.68.0-2 architecture: all unsat-dependency: r-bioc-iranges:i386 depchains: - depchain: - package: sbuild-build-depends-main-dummy version: 0.invalid.0 architecture: i386 depends: r-bioc-annotationdbi:i386 (>= 1.67.0) background-packages: 67062 foreground-packages: 1 total-packages: 67063 broken-packages: 1 +------------------------------------------------------------------------------+ | Cleanup Mon, 14 Apr 2025 05:05:29 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary Mon, 14 Apr 2025 05:05:30 +0000 | +------------------------------------------------------------------------------+ Build Architecture: i386 Build Type: full Build-Space: n/a Build-Time: 0 Distribution: testing Fail-Stage: install-deps Host Architecture: i386 Install-Time: 0 Job: r-bioc-org.hs.eg.db_3.20.0-3 Machine Architecture: amd64 Package: r-bioc-org.hs.eg.db Package-Time: 0 Source-Version: 3.20.0-3 Space: n/a Status: given-back Version: 3.20.0-3 -------------------------------------------------------------------------------- Finished at 2025-04-14T05:04:34Z Build needed 00:00:00, no disk space E: Package build dependencies not satisfied; skipping DC-Status: Failed 56.412914179s